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1

Three-Dimensional Bifurcation Analysis of a Predator-Prey Model with Uncertain Formulation

Aldebert, Clement, Kooi, Bob W., Nerini, David, Gauduchon, Mathias, Poggiale, Jean-Christophe

Journal:

SIAM Journal on Applied Mathematics

Year:

2019

Language:

english

File:

PDF, 731 KB

english, 2019

2

Direct and indirect effects of pollutants on algae and algivorous ciliates in an aquatic indoor microcosm

Markus Liebig, Gunnar Schmidt, Daniel Bontje, Bob W. Kooi, Georg Streck, Walter Traunspurger, Thomas Knacker

Journal:

Aquatic Toxicology

Year:

2008

Language:

english

File:

PDF, 1.06 MB

english, 2008

3

Bifurcation analysis of a family of multi-strain epidemiology models

Kooi, Bob W., Aguiar, Maíra, Stollenwerk, Nico

Journal:

Journal of Computational and Applied Mathematics

Year:

2013

Language:

english

File:

PDF, 1.20 MB

english, 2013

4

Hopf and torus bifurcations, torus destruction and chaos in population biology

Stollenwerk, Nico, Sommer, Pablo Fuentes, Kooi, Bob, Mateus, Luís, Ghaffari, Peyman, Aguiar, Maíra

Journal:

Ecological Complexity

Year:

2017

Language:

english

File:

PDF, 1.14 MB

english, 2017

5

Combining bifurcation and sensitivity analysis for ecological models

George A. K. van Voorn,Bob W. Kooi

Journal:

The European Physical Journal Special Topics

Year:

2017

Language:

english

File:

PDF, 912 KB

english, 2017

6

Analysis of a predator–prey model with specific time scales: a geometrical approach proving the occurrence of canard solutions

Poggiale, Jean-Christophe, Aldebert, Clément, Girardot, Benjamin, Kooi, Bob W.

Journal:

Journal of Mathematical Biology

Year:

2019

Language:

english

File:

PDF, 892 KB

english, 2019

7

Colour preferences of Tetragonula carbonaria Sm. stingless bees for colour morphs of the Australian native orchid Caladenia carnea

Dyer, Adrian G., Boyd-Gerny, Skye, Shrestha, Mani, Garcia, Jair E., van der Kooi, Casper J., Wong, Bob B. M.

Journal:

Journal of Comparative Physiology A: Neuroethology, Sensory, Neural, and Behavioral Physiology

Year:

2019

Language:

english

File:

PDF, 1.25 MB

english, 2019

8

Yeast glycolytic oscillations that are not controlled by a single oscillophore: a new definition of oscillophore strength

Karin A. Reijenga, Yvonne M.G.A. van Megen, Bob W. Kooi, Barbara M. Bakker, Jacky L. Snoep, Henk W. van Verseveld, Hans V. Westerhoff

Journal:

Journal of Theoretical Biology

Year:

2005

Language:

english

File:

PDF, 329 KB

english, 2005

9

Joint evolution of predator body size and prey-size preference

Tineke A. Troost, Bob W. Kooi, Ulf Dieckmann

Journal:

Evolutionary Ecology

Year:

2008

Language:

english

File:

PDF, 574 KB

english, 2008

10

Algal defenses, population stability, and the risk of herbivore extinctions: a chemostat model and experiment

Irene van der Stap, Matthijs Vos, Bob W. Kooi, Bram T. M. Mulling, Ellen van Donk, Wolf M. Mooij

Journal:

Ecological Research

Year:

2009

Language:

english

File:

PDF, 441 KB

english, 2009

11

A second-order, unconditionally positive, mass-conserving integration scheme for biochemical systems

Jorn Bruggeman, Hans Burchard, Bob W. Kooi, Ben Sommeijer

Journal:

Applied Numerical Mathematics

Year:

2007

Language:

english

File:

PDF, 494 KB

english, 2007

12

Bifurcation analysis of a predator–prey model with predators using hawk and dove tactics

Pierre Auger, Bob W. Kooi, Rafael Bravo de la Parra, Jean-Christophe Poggiale

Journal:

Journal of Theoretical Biology

Year:

2006

Language:

english

File:

PDF, 261 KB

english, 2006

13

Inducible defences and the paradox of enrichment

Matthijs Vos, Bob W. Kooi, Donald L. DeAngelis, Wolf M. Mooij

Journal:

Year:

2004

Language:

english

File:

PDF, 303 KB

english, 2004

14

Global change effects on a mechanistic decomposer food web model

Lothar D. J. Kuijper, Matty P. Berg, Elly Morriën, Bob W. Kooi, Herman A. Verhoef

Journal:

Global Change Biology

Year:

2005

Language:

english

File:

PDF, 314 KB

english, 2005

15

Adapt or disperse: understanding species persistence in a changing world

MATTY P. BERG, E. TOBY KIERS, GERARD DRIESSEN, MARCEL Van Der HEIJDEN, BOB W. KOOI, FRANS KUENEN, MAARTJE LIEFTING, HERMAN A. VERHOEF, JACINTHA ELLERS

Journal:

Global Change Biology

Year:

2010

Language:

english

File:

PDF, 190 KB

english, 2010

16

Modeling the Individual Growth of Tetrahymena Sp. and its Population Consequences

CHRISTA H. RATSAK, BOB W. KOOI, BAS KOOIJMAN

Journal:

Journal of Eukaryotic Microbiology

Year:

1995

Language:

english

File:

PDF, 1.01 MB

english, 1995

17

Effects of resources and predation on the predictability of community composition

Daan J. Gerla, Matthijs Vos, Bob W. Kooi, Wolf M. Mooij

Journal:

Year:

2009

Language:

english

File:

PDF, 308 KB

english, 2009

18

The role of seasonality and import in a minimalistic multi-strain dengue model capturing differences between primary and secondary infections: Complex dynamics and its implications for data analysis

Maíra Aguiar, Sebastien Ballesteros, Bob W. Kooi, Nico Stollenwerk

Journal:

Journal of Theoretical Biology

Year:

2011

Language:

english

File:

PDF, 2.85 MB

english, 2011

19

Omnivory and food web dynamics

Lothar D.J. Kuijper, Bob W. Kooi, Cor Zonneveld, Sebastiaan A.L.M. Kooijman

Journal:

Ecological Modelling

Year:

2003

Language:

english

File:

PDF, 299 KB

english, 2003

20

From steady-state to synchronized yeast glycolytic oscillations I: model construction

Franco B. du Preez, David D. van Niekerk, Bob Kooi, Johann M. Rohwer, Jacky L. Snoep

Journal:

Year:

2012

Language:

english

File:

PDF, 627 KB

english, 2012

21

Effects of market price on the dynamics of a spatial fishery model: Over-exploited fishery/traditional fishery

Pierre Auger, Rachid Mchich, Nadia Raïssi, Bob W. Kooi

Journal:

Ecological Complexity

Year:

2010

Language:

english

File:

PDF, 326 KB

english, 2010

22

Stabilization and complex dynamics in a predator–prey model with predator suffering from an infectious disease

Bob W. Kooi, George A.K. van Voorn, Krishna pada Das

Journal:

Ecological Complexity

Year:

2011

Language:

english

File:

PDF, 432 KB

english, 2011

23

When do mixotrophs specialize? Adaptive dynamics theory applied to a dynamic energy budget model

Tineke A. Troost, Bob W. Kooi, Sebastiaan A.L.M. Kooijman

Journal:

Mathematical Biosciences

Year:

2005

Language:

english

File:

PDF, 505 KB

english, 2005

24

Heteroclinic orbits indicate overexploitation in predator–prey systems with a strong Allee effect

George A.K. van Voorn, Lia Hemerik, Martin P. Boer, Bob W. Kooi

Journal:

Mathematical Biosciences

Year:

2007

Language:

english

File:

PDF, 343 KB

english, 2007

25

Effects of density-dependent migrations on stability of a two-patch predator–prey model

Abderrahim El Abdllaoui, Pierre Auger, Bob W. Kooi, Rafael Bravo de la Parra, Rachid Mchich

Journal:

Mathematical Biosciences

Year:

2007

Language:

english

File:

PDF, 466 KB

english, 2007

26

Ecological consequences of global bifurcations in some food chain models

George A.K. van Voorn, Bob W. Kooi, Martin P. Boer

Journal:

Mathematical Biosciences

Year:

2010

Language:

english

File:

PDF, 883 KB

english, 2010

27

The role of intracellular components in food chain dynamics

Paul P.F. Hanegraaf, Bob W. Kooi, Sebastiaan A.L.M. Kooijman

Journal:

Comptes Rendus de l'Académie des Sciences - Series III - Sciences de la Vie

Year:

2000

Language:

french

File:

PDF, 324 KB

french, 2000

28

Stoichiometry and food-chain dynamics

Lothar D.J. Kuijper, Bob W. Kooi, Thomas R. Anderson, Sebastiaan A.L.M. Kooijman

Journal:

Theoretical Population Biology

Year:

2004

Language:

english

File:

PDF, 424 KB

english, 2004

29

Diffusion Barriers Limit the Effect of Mobile Calcium Buffers on Exocytosis of Large Dense Cored Vesicles

Kits, Karel S., de Vlieger, Theo A., Kooi, Bob W., Mansvelder, Huibert D.

Journal:

Biophysical Journal

Year:

1999

Language:

english

File:

PDF, 204 KB

english, 1999

30

Alternative states and population crashes in a resource-susceptible-infected model for planktonic parasites and hosts

GERLA, DAAN J., GSELL, ALENA S., KOOI, BOB W., IBELINGS, BAS W., VAN DONK, ELLEN, MOOIJ, WOLF M.

Journal:

Freshwater Biology

Year:

2013

Language:

english

File:

PDF, 781 KB

english, 2013

31

How much complexity is needed to describe the fluctuations observed in dengue hemorrhagic fever incidence data?

Aguiar, Maíra, Kooi, Bob W., Rocha, Filipe, Ghaffari, Peyman, Stollenwerk, Nico

Journal:

Ecological Complexity

Year:

2013

Language:

english

File:

PDF, 1.86 MB

english, 2013

32

Analysis of an asymmetric two-strain dengue model

Kooi, Bob W., Aguiar, Maíra, Stollenwerk, Nico

Journal:

Mathematical Biosciences

Year:

2014

Language:

english

File:

PDF, 1.41 MB

english, 2014

33

Ecological Specialization of Mixotrophic Plankton in a Mixed Water Column.

Troost, Tineke A., Kooi, Bob W., Kooijman, Sebastiaan A. L. M.

Journal:

American Naturalist

Year:

2005

Language:

english

File:

PDF, 879 KB

english, 2005

34

Torus bifurcations, isolas and chaotic attractors in a simple dengue fever model with ADE and temporary cross immunity

Aguiar, Maíra, Stollenwerk, Nico, Kooi, Bob W.

Journal:

International Journal of Computer Mathematics

Year:

2009

Language:

english

File:

PDF, 266 KB

english, 2009

35

Multiple resource limitation: nonequilibrium coexistence of species in a competition model using a synthesizing unit

Dutta, Partha Sharathi, Kooi, Bob W., Feudel, Ulrike

Journal:

Theoretical Ecology

Year:

2014

Language:

english

File:

PDF, 1.20 MB

english, 2014

36

A reason for intermittent fasting to suppress the awakening of dormant breast tumors

Lankelma, Jan, Kooi, Bob, Krab, Klaas, Dorsman, Josephine C., Joenje, Hans, Westerhoff, Hans V.

Journal:

Year:

2015

Language:

english

File:

PDF, 506 KB

english, 2015

37

Allosteric regulation of phosphofructokinase controls the emergence of glycolytic oscillations in isolated yeast cells

Gustavsson, Anna-Karin, van Niekerk, David D., Adiels, Caroline B., Kooi, Bob, Goksör, Mattias, Snoep, Jacky L.

Journal:

Year:

2014

Language:

english

File:

PDF, 630 KB

english, 2014

38

Revealing the role of predator interference in a predator–prey system with disease in prey population

Chakraborty, Subhendu, Kooi, Bob W., Biswas, Barasha, Chattopadhyay, J.

Journal:

Ecological Complexity

Year:

2015

Language:

english

File:

PDF, 2.34 MB

english, 2015

39

Inherent characteristics of sawtooth cycles can explain different glacial periodicities

Omta, Anne Willem, Kooi, Bob W., van Voorn, George A. K., Rickaby, Rosalind E. M., Follows, Michael J.

Journal:

Climate Dynamics

Year:

2016

Language:

english

File:

PDF, 1.13 MB

english, 2016

40

Ecoepidemic models with prey group defense and feeding saturation

Gimmelli, Giacomo, Kooi, Bob W., Venturino, Ezio

Journal:

Ecological Complexity

Year:

2015

Language:

english

File:

PDF, 987 KB

english, 2015

41

Competition for Light and Nutrients in Layered Communities of Aquatic Plants

van Gerven, Luuk P. A., de Klein, Jeroen J. M., Gerla, Daan J., Kooi, Bob W., Kuiper, Jan J., Mooij, Wolf M.

Journal:

American Naturalist

Year:

2015

Language:

english

File:

PDF, 1.05 MB

english, 2015

42

Epidemiology of Dengue Fever: A Model with Temporary Cross-Immunity and Possible Secondary Infection Shows Bifurcations and Chaotic Behaviour in Wide Parameter Regions

Aguiar, Maíra, Kooi, Bob, Stollenwerk, Nico

Journal:

Mathematical Modelling of Natural Phenomena

Year:

2008

Language:

english

File:

PDF, 1.97 MB

english, 2008

43

[AIP NUMERICAL ANALYSIS AND APPLIED MATHEMATICS: International Conference on Numerical Analysis and Applied Mathematics 2009: Volume 1 and Volume 2 - Rethymno, Crete (Greece) (18–22 September 2009)] AIP Conference Proceedings - Multi-Strain Deterministic Chaos in Dengue Epidemiology, A Challenge for Computational Mathematics

Aguiar, Maíra, Kooi, Bob W., Stollenwerk, Nico, Simos, Theodore E., Psihoyios, George, Tsitouras, Ch.

Year:

2009

Language:

english

File:

PDF, 331 KB

english, 2009

44

AIP Conference Proceedings [AIP NUMERICAL ANALYSIS AND APPLIED MATHEMATICS ICNAAM 2012: International Conference of Numerical Analysis and Applied Mathematics - Kos, Greece (19–25 September 2012)] - Describing dengue epidemics: Insights from simple mechanistic models

Aguiar, Maíra, Stollenwerk, Nico, Kooi, Bob W.

Year:

2012

Language:

english

File:

PDF, 218 KB

english, 2012

45

Haemophilus Influenzae in Lung Explants of Patients with End-stage Pulmonary Disease

MÖLLER, LIEKE V. M., TIMENS, WIM, van der BIJ, WIM, KOOI, KOR, de WEVER, BOB, DANKERT, JACOB, van ALPHEN, LOEK

Journal:

American Journal of Respiratory and Critical Care Medicine

Year:

1998

Language:

english

File:

PDF, 89 KB

english, 1998

46

Inducible Defenses and Trophic Structure

Matthijs Vos, Antonie M. Verschoor, Bob W. Kooi, Felix L. Wäckers, Donald L. DeAngelis and Wolf M. Mooij

Journal:

Year:

2004

Language:

english

File:

PDF, 2.03 MB

english, 2004

47

Ecoepidemic predator–prey model with feeding satiation, prey herd behavior and abandoned infected prey

Kooi, Bob W., Venturino, Ezio

Journal:

Mathematical Biosciences

Year:

2016

Language:

english

File:

PDF, 3.09 MB

english, 2016

48

INDUCIBLE DEFENSES AND TROPHIC STRUCTURE

Vos, Matthijs, Verschoor, Antonie M., Kooi, Bob W., Wäckers, Felix L., DeAngelis, Donald L., Mooij, Wolf M.

Journal:

Year:

2004

Language:

english

File:

PDF, 169 KB

english, 2004

49

Inducible Defences and the Paradox of Enrichment

Matthijs Vos, Bob W. Kooi, Donald L. DeAngelis and Wolf M. Mooij

Journal:

Year:

2004

Language:

english

File:

PDF, 1.43 MB

english, 2004

50

The Dynamics of Springboards

Kooi, Bob W., Kuipers, Max

Journal:

Journal of Applied Biomechanics

Year:

1994

Language:

english

File:

PDF, 4.84 MB

english, 1994